{
  "_id": "6a27d70f24555f66ed546386",
  "Package": "FastSegmentation",
  "Title": "Unsupervised Cell Segmentation by Fast Gaussian Processes",
  "Version": "0.0.1",
  "Authors@R": "c(\nperson(given=\"Blythe\", family=\"King\", email=\"blyking@gmail.com\", role=c(\"aut\",\"cre\")),\nperson(given=\"Haoran\", family=\"Yan\", email=\"hyan82@gatech.edu\", role=\"aut\"),\nperson(given=\"Laura\", family=\"Baracaldo\", email=\"l.baracaldolancheros@lancaster.ac.uk\", role=\"aut\"),\nperson(given=\"Mengyang\", family=\"Gu\", email=\"mengyang@pstat.ucsb.edu\", role=\"aut\"))",
  "Author": "Blythe King [aut, cre], Haoran Yan [aut], Laura Baracaldo\n[aut], Mengyang Gu [aut]",
  "Maintainer": "Blythe King <blyking@gmail.com>",
  "Description": "Performs fast Gaussian process-based segmentation of\nmicroscopy images using spatial smoothing and data-driven\nthresholding. Code based on Baracaldo, L., King, B., Yan, H.,\nLin, Y., Miolane, N., & Gu, M. (2025). \"Unsupervised cell\nsegmentation by fast Gaussian processes.\" arXiv preprint\n<doi:10.48550/arXiv.2505.18902>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-09 08:59:25 UTC",
    "User": "root"
  },
  "Config/pak/sysreqs": "cmake libfftw3-dev make libmagick++-dev gsfonts\nlibjpeg-dev libpng-dev libtiff-dev libuv1-dev libssl-dev",
  "Repository": "https://blytheking.r-universe.dev",
  "Date/Publication": "2026-06-08 17:40:07 UTC",
  "RemoteUrl": "https://github.com/cran/FastSegmentation",
  "RemoteRef": "HEAD",
  "RemoteSha": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
  "MD5sum": "000c96bf34d95b5a89fac33da8345098",
  "_user": "blytheking",
  "_type": "src",
  "_file": "FastSegmentation_0.0.1.tar.gz",
  "_fileid": "534111c2b891be29d29dffc5306b9a2a18998aa2f4aed7c0cf9bc808d68101ae",
  "_filesize": 486827,
  "_sha256": "534111c2b891be29d29dffc5306b9a2a18998aa2f4aed7c0cf9bc808d68101ae",
  "_created": "2026-06-09T08:59:25.000Z",
  "_published": "2026-06-09T09:04:15.271Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80285562689,
      "time": 131,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7503130250"
    },
    {
      "job": 80285562728,
      "time": 131,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7503130275"
    },
    {
      "job": 80285562598,
      "time": 252,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7503157678"
    },
    {
      "job": 80285562597,
      "time": 212,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7503140685"
    },
    {
      "job": 80285054397,
      "time": 172,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7503080383"
    },
    {
      "job": 80285562634,
      "time": 128,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7503128990"
    },
    {
      "job": 80285562639,
      "time": 96,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7503117040"
    },
    {
      "job": 80285562710,
      "time": 88,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7503113627"
    },
    {
      "job": 80285562687,
      "time": 90,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7503114650"
    }
  ],
  "_buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/FastSegmentation",
  "_commit": {
    "id": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
    "author": "Blythe King <blyking@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.0.1\n",
    "time": 1780940407
  },
  "_maintainer": {
    "name": "Blythe King",
    "email": "blyking@gmail.com",
    "login": "blytheking",
    "description": "",
    "uuid": 81788559
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "EBImage",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "magick",
      "role": "Imports"
    },
    {
      "package": "pracma",
      "role": "Imports"
    },
    {
      "package": "RobustGaSP",
      "role": "Imports"
    },
    {
      "package": "plot3D",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-24",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.0.1",
      "date": "2026-06-08"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "blytheking",
      "count": 1,
      "uuid": 81788559
    }
  ],
  "_userbio": {
    "uuid": 81788559,
    "type": "user",
    "name": "Blythe King"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/FastSegmentation"
  },
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/FastSegmentation.html",
    "manual.pdf"
  ],
  "_realowner": "blytheking",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2026-06-08"
    }
  ],
  "_exports": [
    "criterion_1",
    "eliminate_small_areas",
    "generate_GP_Masks",
    "get_proportion",
    "matrix_which",
    "predict_separable_GP",
    "separable_GP_param_est",
    "threshold_image"
  ],
  "_help": [
    {
      "page": "criterion_1",
      "title": "Determining optimal threshold by criterion 1",
      "topics": [
        "criterion_1"
      ]
    },
    {
      "page": "eliminate_small_areas",
      "title": "Eliminating Noise and Small Foreign Object Masks from Cell Mask Matrix",
      "topics": [
        "eliminate_small_areas"
      ]
    },
    {
      "page": "generate_GP_Masks",
      "title": "Generate cell masks by fast Gaussian processes",
      "topics": [
        "generate_GP_Masks"
      ]
    },
    {
      "page": "get_proportion",
      "title": "Dynamically determine row and column proportions",
      "topics": [
        "get_proportion"
      ]
    },
    {
      "page": "matrix_which",
      "title": "Get coordinate information for matrices",
      "topics": [
        "matrix_which"
      ]
    },
    {
      "page": "predict_separable_GP",
      "title": "Generating predictive mean from image matrix",
      "topics": [
        "predict_separable_GP"
      ]
    },
    {
      "page": "separable_GP_param_est",
      "title": "Estimate nugget and range parameters for predictive mean of an image matrix",
      "topics": [
        "separable_GP_param_est"
      ]
    },
    {
      "page": "threshold_image",
      "title": "Setting a threshold to create a binary image matrix",
      "topics": [
        "threshold_image"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "base64enc",
    "BiocGenerics",
    "bitops",
    "bslib",
    "cachem",
    "cli",
    "curl",
    "digest",
    "EBImage",
    "evaluate",
    "fastmap",
    "fftwtools",
    "fontawesome",
    "fs",
    "generics",
    "highr",
    "htmltools",
    "htmlwidgets",
    "jpeg",
    "jquerylib",
    "jsonlite",
    "knitr",
    "lattice",
    "lifecycle",
    "locfit",
    "magick",
    "magrittr",
    "memoise",
    "mime",
    "nloptr",
    "png",
    "pracma",
    "R6",
    "rappdirs",
    "Rcpp",
    "RcppEigen",
    "RCurl",
    "rlang",
    "rmarkdown",
    "RobustGaSP",
    "sass",
    "tiff",
    "tinytex",
    "xfun",
    "yaml"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "fastsegmentation",
  "_universes": [
    "blytheking"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-06-09T09:01:34.000Z",
      "distro": "noble",
      "commit": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
      "fileid": "33c4548e94ae69c868eea917d8f7f07e3078ea6f1225dd1ac0885ce38b6a7ec6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.1",
      "date": "2026-06-09T09:01:34.000Z",
      "distro": "noble",
      "commit": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
      "fileid": "6a0faecd397fdfe90da986b019f27b44553219916087aad9a2ee15a706129b20",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-06-09T09:02:39.000Z",
      "commit": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
      "fileid": "535f8b5a5344658cdb22447c90e2c3fb38e8e3c6ab42137f0102043f9159561f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.1",
      "date": "2026-06-09T09:01:56.000Z",
      "commit": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
      "fileid": "4ebaff65f5230e782e54ccc75b1e5dc85d39412e9963c0f6c72e2d8a64d0cce4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.1",
      "date": "2026-06-09T09:01:52.000Z",
      "commit": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
      "fileid": "ddd52ca93bbc9c47e2b004543603d937be124f8b688c4f2b19019cbc02ce35e5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-09T09:00:53.000Z",
      "commit": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
      "fileid": "441d15470ca6fbaf572964e444ba3bef48d9ce1d8209c8f56ba54267b40b0c7b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-09T09:00:45.000Z",
      "commit": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
      "fileid": "2a0c30dc69f0f173ee4531ea0173ee6db630853bd03c2574e5d4184ac139fd9e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.1",
      "date": "2026-06-09T09:00:45.000Z",
      "commit": "c3cacb7c943a5c9a5fb30aa63a802147a1dd18ec",
      "fileid": "8768c30a2d1c89b8e5f94cccdb42dd875c92716346096e5ecedf89d2241f524b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/blytheking/actions/runs/27195219146"
    }
  ]
}